表型组学在水稻研究中的应用

水稻作为重要粮食作物,其重要农艺性状的功能基因组研究是植物生物学研究的热点。植物基因型、表型和环境三者构成了遗传学研究的铁三角。随着高通量测序技术的快速发展,基因型的研究更加简单快速。然而表型研究严重滞后于基因型研究。目前传统的表型信息的获取存在所需劳动量巨大、成本高,所获取表型数据受人工主观因素影响大等诸多难题。高通量表型组学可无损、高通量、精准获取表型信息,对解决以上难题具有关键作用。本文对表型组学在水稻中的研究应用情况进行整理,为今后水稻基因组学和表型组学等多学科相结合的现代研究手段提供理论支撑。     

国际30年来土壤食物网的研究历程与热点分析

利用文献计量学方法,研究1989—2018年来土壤食物网研究领域的热点内容,概括土壤食物网的研究脉络及国际土壤食物网未来的研究方向。结果显示:土壤生物多样性、食物网的碳氮循环功能及管理方式对土壤食物网结构的干扰是现在研究热点,而土壤食物网功能多样性、系统稳定性、及土壤食物网对全球变化的响应则是新兴的研究方向。     

瓜实蝇龄期和密度对蝇蛹金小蜂寄生能力的影响

蝇蛹金小蜂是蝇类害虫重要的蛹期寄生性天敌，为了评价其对蔬菜上重要害虫瓜实蝇的控害潜能，本文就蝇蛹金小蜂对瓜实蝇蛹的寄生潜能进行了研究，建立了功能反应和干扰效应数学模型。结果表明，蝇蛹金小蜂对不同蛹龄瓜实蝇蛹的寄生功能反应均符合 HollingⅡ模型，但不同蛹龄之间的功能反应参数存在差异。蝇蛹金小蜂对 2 日龄、4 日龄和 6 日龄瓜实蝇蛹的模方程分别为 Na = 0.478 0N0/(1+0.010N0)、Na = 0.474 0N0/(1+0.008 6N0) 和 Na = 0.476 4N0/(1+0.009 9N0)。蝇蛹金小蜂自身密度也会对寄生产生一定的干扰效应，用 Hassell-Varley 模型拟合，蝇蛹金小蜂干扰效应方程可表示为：a = 0.071 9P –0.252 6。     

Fish functional diversity responses following flood pulses in the upper Paraná River floodplain

Flood pulses are the main force driving the dynamics of aquatic communities in floodplains. The responses of communities to environmental changes following flood pulses usually demand a time lag to appear and reach the climax. We assembled a data set of 16 years of fish samplings to assess the relationship between water level and four functional diversity measures, in the upper Paraná River floodplain. Specifically, we approached four aspects of each relationship between water level and functional diversity: nature (positive or negative), sensitivity (response intensity), responsiveness (response delay) and extent (response duration). The nature of the relationship between water level and functional diversity was positive in all cases. Functional richness (FRic) responded right after flood pulses, although with shorter extent. Abundance‐dependent functional measures (evenness—FEve; divergence—FDiv; and Rao's quadratic entropy—Rao's Q) presented delayed responses, reaching peaks more than 1.5 years after flood pulses. Significant effects of floods on fish functional diversity were observed for more than 3 years, although the highest functional diversity was observed with 1.8 years, on average. More importantly, flood pulses had no longer significant effects on functional diversity after 4 years. Regarding conservation strategies in regulated systems, flood events should occur every 2 or 3 years, with adequate timing (October‐November), intensity (up to 450 cm) and duration (at least 50 uninterrupted days). Intervals longer than 3 years or inadequate timing, intensity and duration could dramatically decrease functional diversity and compromise ecosystem services.     

Identification and quantification of anthocyanins in different coloured cultivars of ornamental kale (Brassica oleracea L. var. acephala DC)

Anthocyanins are responsible for the colour of many fruits, vegetables, flowers, and coloured-leaved trees. Ornamental kale (Brassica oleracea L. var. acephala DC) is widely cultivated for its colourful inner leaves. To investigate the relationship between the degree of colouration and anthocyanin distribution, content, and composition in ornamental kale, the authors studied the pigment characteristics of five cultivars with different coloured leaves (white, pink, red, purple, and purple-black). Microscopy observation, spectrophotometer, and high-performance liquid chromatography-mass spectrometry (HPLC-MS) analysis of fresh inner leaves revealed that pink, red, and purple colourations were associated with high levels of anthocyanin, while purple-black was the result of the combination of anthocyanins and chlorophyll. In the coloured cultivars, anthocyanins were abundant mainly in the first and second cell layers below the epidermis in both the hypocotyls and inner leaves. No anthocyanin was found in the white-leaved phenotype cultivar. Anthocyanin content increased as leaf colour deepened from pink, red, to purple cultivars, which had little chlorophyll and carotenoid. The authors identified eight anthocyanins in the four coloured cultivars, including one non-acylated, four monoacylated, and three diacylated cyanidin glycosides. Cyanidin-3-(sinapoyl)(feruloyl)-diglucoside-5-glucoside was the most abundant anthocyanin in the four coloured cultivars followed by cyanidin-3-(sinapoyl)-diglucoside-5-glucoside. The analysis of anthocyanin accumulation characterisation provides important information on evaluating colouration patterns in coloured plants, and will be helpful for breeding desired leaf colours in ornamental kale.     

Carbohydrate and crude protein fractions in perennial ryegrass as affected by defoliation frequency and nitrogen application rate

The objective of this study was to evaluate the effects of defoliation frequency (either at two‐ or three‐leaf stage) and nitrogen (N) application rate (0, 75, 150, 300, 450 kg N ha^?1 year^?1) on herbage carbohydrate and crude protein (CP) fractions, and the water‐soluble carbohydrate‐to‐protein ratio (WSC:CP) in perennial ryegrass swards. Crude protein fractions were analysed according to the Cornell carbohydrate and protein system. Carbohydrate fractions were analysed by ultra‐high‐performance liquid chromatography. Sward defoliation at two‐leaf stage increased the total CP, reduced the buffer‐soluble CP fractions and decreased carbohydrate fractions of herbage (P < 0·001). The effect of defoliation frequency was less marked during early spring and autumn (P < 0·001) than for the rest of the seasons. An increase in N application rate was negatively associated with WSC, fructans and neutral detergent fibre (P < 0·001), and positively associated with CP and nitrate (N‐NO₃) contents of herbage. Nitrogen application rate did not affect CP fractions of herbage (P > 0·05). The fluctuations in CP and WSC contents of herbage resulted in lower WSC:CP ratios during early spring and autumn (0·45:1 and 0·75:1 respectively) than in late spring (1·11:1). The herbage WSC:CP ratio was greater (P < 0·001) at the three‐leaf than the two‐leaf defoliation stage and declined as the N application increased in all seasons (P < 0·001). The results of this study indicate that CP and carbohydrate fractions of herbage can be manipulated by sward defoliation frequency and N application rate. The magnitude of these effects, however, may vary with the season.     

Liver histology and histomorphometry in hybrid sorubim (Pseudoplatystoma reticulatum × Pseudoplatystoma corruscans) reared on intensive fish farming

This study aimed to characterize the liver histology and histomorphometry in sorubim hybrid of different categories (nursery, growth and grow‐out) reared on fish farming. The categories were defined considering body weight (BW): nursery category (n = 5): BW = 37.06 ± 6.00 g (31.6–45.3 g); growth category (n = 5): BW = 310.40 ± 53.80 g (242.1–376.4 g) and grow‐out category (n = 5): BW = 874.28 ± 27.59 g (846.2–913.1 g). Liver fragments were processed to paraffin inclusion, and sections were stained by haematoxylin and eosin (H&E), PAS (Periodic Acid Schiff) and Perl's staining to histology, histomorphometry and density volumetric of liver structures; glycogen analysis and to detect ferric irons (Fe³⁺) respectively. The hepatosomatic index decreased between the categories (P < 0.01). The percentage of PAS‐positive hepatocytes in the nursery category was higher (P < 0.05) in relation to the growth and grow‐out categories. The hepatocytes from all fish were positive to Perl's staining. The density volumetric of liver structures did not differ among categories except to blood vessels were higher (P < 0.01) in the nursery and growth. The area (μm²) and perimeter (μm) of hepatocytes, and the area (μm²), perimeter (μm) and volume (μm³) of the nuclei from grow‐out fish were lower (P < 0.01) than those from the nursery and growth categories. Changes in morphometric characteristics of hepatocytes may result from metabolic changes associated with body growth surubins; therefore, these morphometric characteristics of liver tissue can be used as functional biomarkers for the assessment of fish health and nutrition status.     

槟榔黄化病病原及检测方法研究进展

黄化病是一种严重威胁槟榔生产种植的毁灭性传染性病害，目前主要在印度和我国槟榔主产区发生。本文从非生物与生物因素两方面对槟榔黄化病病原认识过程及检测方法进行详细的综述。     

甘蔗叶不同还田方式对土壤养分的影响

为减轻秸秆焚烧所带来的环境问题和充分利用甘蔗叶资源,在大田环境下动态监测甘蔗叶粉碎、焚烧和深埋3种还田方式对土壤养分的影响。结果表明:甘蔗叶粉碎还田和深埋还田有利于甘蔗叶中有机碳及氮、磷、钾养分的缓慢释放;甘蔗叶焚烧还田提高了土壤碱解氮含量5.6~20.9 mg/kg和速效磷含量0.8~4.0 mg/kg,促进土壤中氮磷向有效态转化,焚烧还田初期显著增加了土壤速效钾的含量12.3~18.3 mg/kg,但焚烧会损失部分甘蔗叶中碳氮元素,也造成环境污染。综合分析认为甘蔗叶粉碎还田是比较省工、方便的处理方式。     

Impact of land‐use intensity on the relationships between vegetation indices,photosynthesis and biomass of intensively and extensively managed grassland fens

Vegetation indices are widely used as model inputs and for non‐destructive estimation of biomass and photosynthesis, but there have been few validation studies of the underlying relationships. To test their applicability on temperate fens and the impact of management intensity, we investigated the relationships between normalized difference vegetation index (NDVI), leaf area index (LAI), brown and green above‐ground biomass and photosynthesis potential (PP). Only the linear relationship between NDVI and PP was management independent (R² = 0·53). LAI to PP was described by a site‐specific and negative logarithmic function (R² = 0·07–0·68). The hyperbolic relationship of LAI versus NDVI showed a high residual standard error (s.e.) of 1·71–1·84 and differed between extensive and intensive meadows. Biomass and LAI correlated poorly (R² = 0·30), with high species‐specific variability. Intensive meadows had a higher ratio of LAI to biomass than extensive grasslands. The fraction of green to total biomass versus NDVI showed considerable noise (s.e. = 0·13). These relationships were relatively weak compared with results from other ecosystems. A likely explanation could be the high amount of standing litter, which was unevenly distributed within the vegetation canopy depending on the season and on the timing of cutting events. Our results show there is high uncertainty in the application of the relationships on temperate fen meadows. For reliable estimations, management intensity needs to be taken into account and several direct measurements throughout the year are required for site‐specific correction of the relationships, especially under extensive management. Using NDVI instead of LAI could reduce uncertainty in photosynthesis models.